PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_26645_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 171aa    MW: 19070 Da    PI: 10.1588
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_26645_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-2083134256
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                          +y+GVr+++ +g+++AeIrd + ng  +r++lg+f taeeAa a+++a+ +++g+
  cra_locus_26645_iso_1_len_810_ver_3  83 HYRGVRRRP-WGKYAAEIRDSTRNG--ARVWLGTFETAEEAALAYDRAAFRMRGA 134
                                          8********.**********44465..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.5E-3282142IPR001471AP2/ERF domain
CDDcd000189.30E-3382141No hitNo description
PfamPF008477.4E-1583133IPR001471AP2/ERF domain
PROSITE profilePS5103223.80283141IPR001471AP2/ERF domain
SMARTSM003807.9E-3783147IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2483142IPR016177DNA-binding domain
PRINTSPR003671.6E-118495IPR001471AP2/ERF domain
PRINTSPR003671.6E-11107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
XKTSQLLLQK QKILQXAMFP SPQYCELPLN ENDSQEIILH EILSQATEIS NPESSSKLPS  60
RNQQSFLSHL LPRSTHNSIG KKHYRGVRRR PWGKYAAEIR DSTRNGARVW LGTFETAEEA  120
ALAYDRAAFR MRGAKALLNF PSQVLAAAAE STQKLVHVPN SSSNSDKASG D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-3482144466ATERF1
3gcc_A1e-3482144466ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874202.12e-56PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like
RefseqXP_015874196.12e-56PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like
RefseqXP_006367196.13e-56PREDICTED: pathogenesis-related genes transcriptional activator PTI5
SwissprotO046811e-56PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A068TKE65e-59A0A068TKE6_COFCA; Uncharacterized protein
TrEMBLV5REQ65e-59V5REQ6_COFAR; ERF transcription factor 11
STRINGPGSC0003DMT4000278499e-56(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165